Scientific name | Hydropotes inermis |
Common name | Chinese water deer |
Maximum lifespan | 13.90 years (Hydropotes inermis@AnAge) |
Total mtDNA (size: 16355 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5904 | 10451 | 3725 | 2179 | 4990 | 5461 |
Base content per 1 kb (bases) | 361 | 639 | 228 | 133 | 305 | 334 |
Base content (%) | 36.1% | 63.9% |
Total protein-coding genes (size: 11339 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4050 | 7289 | 2692 | 1358 | 3603 | 3686 |
Base content per 1 kb (bases) | 357 | 643 | 237 | 120 | 318 | 325 |
Base content (%) | 35.7% | 64.3% |
D-loop (size: 926 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 351 | 575 | 215 | 136 | 303 | 272 |
Base content per 1 kb (bases) | 379 | 621 | 232 | 147 | 327 | 294 |
Base content (%) | 37.9% | 62.1% |
Total tRNA-coding genes (size: 1508 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 535 | 973 | 301 | 234 | 434 | 539 |
Base content per 1 kb (bases) | 355 | 645 | 200 | 155 | 288 | 357 |
Base content (%) | 35.5% | 64.5% |
Total rRNA-coding genes (size: 2524 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 940 | 1584 | 500 | 440 | 638 | 946 |
Base content per 1 kb (bases) | 372 | 628 | 198 | 174 | 253 | 375 |
Base content (%) | 37.2% | 62.8% |
12S rRNA gene (size: 957 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 375 | 582 | 201 | 174 | 229 | 353 |
Base content per 1 kb (bases) | 392 | 608 | 210 | 182 | 239 | 369 |
Base content (%) | 39.2% | 60.8% |
16S rRNA gene (size: 1567 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 565 | 1002 | 299 | 266 | 409 | 593 |
Base content per 1 kb (bases) | 361 | 639 | 191 | 170 | 261 | 378 |
Base content (%) | 36.1% | 63.9% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 249 | 432 | 168 | 81 | 221 | 211 |
Base content per 1 kb (bases) | 366 | 634 | 247 | 119 | 325 | 310 |
Base content (%) | 36.6% | 63.4% |
ATP8 (size: 201 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 59 | 142 | 44 | 15 | 61 | 81 |
Base content per 1 kb (bases) | 294 | 706 | 219 | 75 | 303 | 403 |
Base content (%) | 29.4% | 70.6% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 556 | 989 | 313 | 243 | 541 | 448 |
Base content per 1 kb (bases) | 360 | 640 | 203 | 157 | 350 | 290 |
Base content (%) | 36.0% | 64.0% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 231 | 453 | 140 | 91 | 211 | 242 |
Base content per 1 kb (bases) | 338 | 662 | 205 | 133 | 308 | 354 |
Base content (%) | 33.8% | 66.2% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 324 | 460 | 208 | 116 | 246 | 214 |
Base content per 1 kb (bases) | 413 | 587 | 265 | 148 | 314 | 273 |
Base content (%) | 41.3% | 58.7% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 433 | 707 | 284 | 149 | 356 | 351 |
Base content per 1 kb (bases) | 380 | 620 | 249 | 131 | 312 | 308 |
Base content (%) | 38.0% | 62.0% |
ND1 (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 342 | 614 | 228 | 114 | 312 | 302 |
Base content per 1 kb (bases) | 358 | 642 | 238 | 119 | 326 | 316 |
Base content (%) | 35.8% | 64.2% |
ND2 (size: 1043 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 342 | 701 | 249 | 93 | 319 | 382 |
Base content per 1 kb (bases) | 328 | 672 | 239 | 89 | 306 | 366 |
Base content (%) | 32.8% | 67.2% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 122 | 224 | 84 | 38 | 112 | 112 |
Base content per 1 kb (bases) | 353 | 647 | 243 | 110 | 324 | 324 |
Base content (%) | 35.3% | 64.7% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 496 | 882 | 345 | 151 | 440 | 442 |
Base content per 1 kb (bases) | 360 | 640 | 250 | 110 | 319 | 321 |
Base content (%) | 36.0% | 64.0% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 103 | 194 | 62 | 41 | 105 | 89 |
Base content per 1 kb (bases) | 347 | 653 | 209 | 138 | 354 | 300 |
Base content (%) | 34.7% | 65.3% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 627 | 1194 | 433 | 194 | 580 | 614 |
Base content per 1 kb (bases) | 344 | 656 | 238 | 107 | 319 | 337 |
Base content (%) | 34.4% | 65.6% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 183 | 345 | 145 | 38 | 123 | 222 |
Base content per 1 kb (bases) | 347 | 653 | 275 | 72 | 233 | 420 |
Base content (%) | 34.7% | 65.3% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 3 | 10 | 9 | 6 | 11 | 5 | 12 | 8 | 1 | 5 | 1 | 5 | 1 | 11 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 5 | 6 | 5 | 0 | 1 | 4 | 5 | 2 | 0 | 5 | 7 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 13 | 1 | 2 | 1 | 6 | 0 | 4 | 2 | 0 | 2 | 0 | 0 | 7 | 3 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 3 | 0 | 0 | 1 | 4 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
44 | 62 | 81 | 40 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
25 | 61 | 36 | 105 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 45 | 94 | 76 |
ATP8 (size: 201 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWLVMILSMFMVLFIIFQLKVSKHNFYFNPEPKSTKMQKQNTPWEVKWTKIYLPLLLPQ* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 2 | 4 | 2 | 1 | 1 | 0 | 4 | 4 | 1 | 0 | 1 | 2 | 1 | 4 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 2 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 2 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
7 | 16 | 24 | 20 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
3 | 15 | 22 | 27 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 13 | 35 | 14 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
33 | 6 | 30 | 8 | 7 | 20 | 2 | 23 | 6 | 0 | 17 | 3 | 13 | 4 | 30 | 12 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 1 | 12 | 9 | 18 | 0 | 11 | 10 | 21 | 5 | 15 | 5 | 8 | 0 | 11 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 20 | 0 | 10 | 3 | 14 | 0 | 3 | 0 | 15 | 4 | 2 | 0 | 15 | 4 | 10 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 9 | 1 | 9 | 6 | 8 | 1 | 1 | 1 | 5 | 1 | 0 | 0 | 1 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
148 | 96 | 141 | 130 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 132 | 96 | 211 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
19 | 85 | 211 | 200 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 4 | 11 | 3 | 2 | 14 | 3 | 12 | 6 | 0 | 5 | 3 | 6 | 0 | 5 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 2 | 0 | 2 | 3 | 3 | 0 | 3 | 0 | 4 | 1 | 2 | 1 | 10 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 11 | 0 | 6 | 2 | 8 | 0 | 1 | 4 | 11 | 0 | 0 | 0 | 2 | 3 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 13 | 2 | 4 | 6 | 6 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
55 | 54 | 66 | 53 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 55 | 61 | 86 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 31 | 115 | 72 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 7 | 6 | 7 | 3 | 11 | 3 | 8 | 6 | 1 | 2 | 6 | 6 | 1 | 11 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 2 | 4 | 8 | 3 | 0 | 5 | 7 | 5 | 3 | 3 | 3 | 6 | 0 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 10 | 0 | 4 | 1 | 10 | 0 | 3 | 1 | 6 | 5 | 1 | 0 | 4 | 3 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 8 | 0 | 3 | 0 | 3 | 0 | 1 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
61 | 65 | 63 | 72 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 65 | 56 | 97 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 78 | 95 | 76 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 14 | 10 | 11 | 10 | 19 | 5 | 14 | 6 | 0 | 2 | 9 | 9 | 1 | 15 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 1 | 3 | 2 | 5 | 15 | 0 | 3 | 5 | 15 | 1 | 3 | 4 | 16 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 15 | 1 | 4 | 5 | 12 | 0 | 0 | 3 | 9 | 6 | 0 | 0 | 11 | 7 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 6 | 0 | 5 | 6 | 9 | 0 | 0 | 1 | 7 | 0 | 1 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
84 | 93 | 109 | 94 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 90 | 76 | 162 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 101 | 166 | 100 |
ND1 (size: 956 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 8 | 15 | 6 | 3 | 28 | 4 | 14 | 7 | 0 | 4 | 0 | 9 | 1 | 13 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 8 | 4 | 16 | 0 | 3 | 5 | 4 | 0 | 8 | 6 | 7 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 12 | 1 | 3 | 5 | 11 | 1 | 2 | 1 | 6 | 5 | 0 | 1 | 6 | 7 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 10 | 1 | 2 | 1 | 6 | 1 | 0 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
68 | 81 | 91 | 78 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 88 | 55 | 142 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 59 | 155 | 91 |
ND2 (size: 1043 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 9 | 36 | 6 | 7 | 23 | 1 | 16 | 10 | 0 | 5 | 4 | 4 | 0 | 9 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 0 | 0 | 3 | 6 | 8 | 0 | 1 | 4 | 8 | 1 | 4 | 4 | 12 | 0 | 12 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 14 | 1 | 2 | 8 | 16 | 0 | 0 | 2 | 5 | 3 | 1 | 0 | 9 | 8 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 5 | 0 | 1 | 0 | 11 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
50 | 75 | 148 | 74 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 101 | 58 | 159 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
14 | 73 | 175 | 85 |
ND3 (size: 1043 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 9 | 36 | 6 | 7 | 23 | 1 | 16 | 10 | 0 | 5 | 4 | 4 | 0 | 9 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 0 | 0 | 3 | 6 | 8 | 0 | 1 | 4 | 8 | 1 | 4 | 4 | 12 | 0 | 12 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 14 | 1 | 2 | 8 | 16 | 0 | 0 | 2 | 5 | 3 | 1 | 0 | 9 | 8 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 5 | 0 | 1 | 0 | 11 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
50 | 75 | 148 | 74 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 101 | 58 | 159 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
14 | 73 | 175 | 85 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 12 | 33 | 13 | 13 | 33 | 5 | 23 | 9 | 1 | 4 | 5 | 8 | 0 | 9 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 3 | 0 | 7 | 8 | 10 | 1 | 2 | 7 | 9 | 0 | 11 | 3 | 6 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 19 | 1 | 5 | 12 | 12 | 1 | 5 | 6 | 12 | 5 | 0 | 6 | 11 | 13 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 9 | 1 | 0 | 3 | 10 | 1 | 0 | 3 | 6 | 1 | 0 | 0 | 0 | 0 | 13 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
74 | 115 | 156 | 114 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
55 | 112 | 86 | 206 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
22 | 118 | 200 | 119 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 0 | 9 | 2 | 2 | 7 | 2 | 7 | 2 | 0 | 3 | 0 | 5 | 1 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 2 | 2 | 2 | 4 | 0 | 1 | 1 | 2 | 0 | 0 | 1 | 0 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 3 | 1 | 2 | 3 | 3 | 0 | 1 | 0 | 4 | 0 | 0 | 2 | 2 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
24 | 19 | 27 | 29 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 24 | 17 | 49 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 19 | 45 | 27 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
46 | 19 | 37 | 11 | 13 | 33 | 2 | 24 | 16 | 3 | 6 | 3 | 8 | 0 | 35 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 3 | 2 | 7 | 11 | 20 | 1 | 4 | 10 | 11 | 2 | 5 | 9 | 11 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
14 | 28 | 2 | 6 | 12 | 16 | 1 | 4 | 9 | 13 | 5 | 2 | 0 | 18 | 20 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 9 | 3 | 5 | 6 | 22 | 0 | 1 | 4 | 3 | 0 | 0 | 0 | 1 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
106 | 123 | 233 | 145 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
65 | 152 | 132 | 258 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
23 | 158 | 249 | 177 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 1 | 5 | 1 | 0 | 0 | 0 | 13 | 0 | 2 | 9 | 0 | 7 | 8 | 13 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 0 | 4 | 0 | 1 | 1 | 13 | 2 | 4 | 7 | 3 | 0 | 0 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 3 | 3 | 5 | 0 | 1 | 1 | 4 | 0 | 8 | 2 | 2 | 2 | 4 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 3 | 6 | 4 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 7 | 49 | 51 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 26 | 33 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
40 | 5 | 41 | 90 |
Total protein-coding genes (size: 11404 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
250 | 87 | 212 | 84 | 69 | 212 | 32 | 178 | 83 | 9 | 64 | 35 | 83 | 18 | 161 | 91 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
46 | 12 | 11 | 60 | 66 | 106 | 3 | 47 | 55 | 91 | 22 | 59 | 43 | 88 | 2 | 70 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
64 | 155 | 12 | 50 | 53 | 116 | 4 | 27 | 30 | 93 | 39 | 8 | 12 | 90 | 77 | 46 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
45 | 84 | 15 | 36 | 31 | 89 | 7 | 7 | 14 | 40 | 2 | 1 | 0 | 7 | 0 | 96 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
816 | 835 | 1217 | 931 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
463 | 951 | 751 | 1634 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
192 | 810 | 1641 | 1156 |
Failed to understand id: ?term=("Hydropotes inermis"[Organism]) AND (refseq[filter] AND mitochondrion[filter])